Uses of Class
org.bioquery.query.InvalidQueryLineException

Packages that use InvalidQueryLineException

org.bioquery.query

A complete framework for modeling, storing, and submitting queries to mutliple different databases.

Uses of InvalidQueryLineException in org.bioquery.query

Methods in org.bioquery.query that throw InvalidQueryLineException

static java.lang.String	QuerySubmitter.parseQueryLine(QueryLine queryLine) Takes a QueryLine object and returns the queryText for that object with any references to other QueryLines fully expanded into the raw fields and boolean commands that make up the Query.
abstract java.io.BufferedReader	QuerySubmitter.getQueryResults() Submits this QuerySubmitter's Query object to the appropriate database and returns a BufferedReader containing the text results.
abstract java.io.BufferedReader	QuerySubmitter.getQueryData() Finds the number of references returned by each line of the Query.
java.io.BufferedReader	NCBIQuerySubmitter.getQueryResults() Submits this QuerySubmitter's Query object to the appropriate database and returns a BufferedReader containing the text results.
java.io.BufferedReader	NCBIQuerySubmitter.getQueryData() Finds the number of references returned by each line of the Query.
protected java.lang.String	NCBIQuerySubmitter.getSubmittableText() Returns the text to be submitted of the Query.
void	Query.setQueryLine(int lineNum, QueryLine queryLine) Assigns a QueryLine object to the designed line number.
void	Query.setSubmitLine(int lineNum) Sets which QueryLine should be submitted to the database.
void	Query.insertQueryLine(int lineNum) Insert a blank QueryLine into the list of queryLines at the designated linenum.
void	Query.deleteQueryLine(int lineNum) Deletes the QueryLine at the designated line number.